Pathway Commons

Pathway Guide

Pathway Commons

Workflows

Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap. Jüri Reimand et al.
Nature Protocols, Volume 14, 482–517 (2019)

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RNA-Seq to Enrichment Map

Identify altered pathways within platelet RNA-Seq data using Gene Set Enrichment Analysis and visualize results in an Enrichment Map

Filed under Pathway Enrichment Analysis

Primers

Fisher's Exact Test
Fisher's Exact Test

Walkthrough of how the test is applied in pathway enrichment analysis

Filed under Statistics

Multiple Testing
Multiple Testing

Deep-dive into the basis of multiple testing errors and popular correction methods

Filed under Statistics

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